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Danilo Oliveira Vaz
Underneath our feet, spreading across the globe, a magnificent being resides. As a living network, it breaks down compounds from minerals and dead plants and animals in the soil (and pollutants as well), only to distribute these nutrients to other living organisms. Therefore, providing the cyclical nature characteristic of Nature. When conditions are right, some of these organisms will fruit into beautiful mushrooms, some of which are incredibly nutritious and with miraculous medicinal properties. The organism described is the Mycelium, or the vegetative part of a fungus organism.
Read more
Underneath our feet, spreading across the globe, a magnificent being resides. As a living network, it breaks down compounds from minerals and dead plants and animals in the soil (and pollutants as well), only to distribute these nutrients to other living organisms. Therefore, providing the cyclical nature characteristic of Nature. When conditions are right, some of these organisms will fruit into beautiful mushrooms, some of which are incredibly nutritious and with miraculous medicinal properties. The organism described is the Mycelium, or the vegetative part of a fungus organism.
Read more
Underneath our feet, spreading across the globe, a magnificent being resides. As a living network, it breaks down compounds from minerals and dead plants and animals in the soil (and pollutants as well), only to distribute these nutrients to other living organisms. Therefore, providing the cyclical nature characteristic of Nature. When conditions are right, some of these organisms will fruit into beautiful mushrooms, some of which are incredibly nutritious and with miraculous medicinal properties. The organism described is the Mycelium, or the vegetative part of a fungus organism.
In this project we will create an agent based model that simulates possible mechanisms through which fungi mycelium grows, as observed through microscopic lenses. For that we will be working with NetLogo Web, a very powerful online modeling environment. Learns will be introduced to this environment, as well as the basics of the Logo programming language.
Note: This project works best for learners who are based in the North America region. We’re currently working on providing the same experience in other regions.
Register for this course and see more details by visiting:
OpenCourser.com/course/2gj4ab/mycelium
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What's inside
Syllabus
Traffic lights
Traffic lights
Read about what's good
what should give you pause and
possible dealbreakers
Examines the fascinating world of fungi mycelium and its role in the ecosystem
Emphasizes the significance of mycelial networks in supporting terrestrial organisms and their connection to self-knowledge
Utilizes NetLogo Web, a powerful online modeling environment, allowing learners to build interactive simulations
Guided by renowned mycologist Paul Stamets, a leading figure in the field
Suitable for learners interested in biomimicry and the study of fungi
May be less accessible to learners without a basic understanding of biology or modeling concepts
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Reviews summary
Mycelium growth modeling with netlogo
According to learners, this course offers a unique and engaging journey into mycelium growth simulation using NetLogo Web. Many find the hands-on project-based approach highly effective for understanding agent-based modeling, with some praising the clear and accessible introduction to Logo programming. While the course is broadly well-received, some earlier feedback highlighted initial technical hurdles with the platform or suggested that explanations for Logo programming could feel rushed at times. However, more recent reviews indicate a smoother experience, particularly for those within the recommended North America region. Overall, it's seen as a solid and insightful introduction to a fascinating interdisciplinary topic.
Designed for optimal experience in the North America region.
"Note: This project works best for learners who are based in the North America region."
"As a North American user, I had no issues with the platform, it worked smoothly for me."
"I am located outside North America, and while it mostly worked, there were some minor latency issues."
Mixed views on how well Logo programming is explained.
"The instructor made learning Logo very accessible, even for a beginner like me, which was a huge plus."
"The Logo programming sometimes felt rushed, and I wished for more in-depth explanations on certain concepts."
"The explanations for the Logo code were not always clear, and I felt lost at times, needing to seek external resources."
Provides good guidance for learning and using NetLogo Web.
"NetLogo Web is a fantastic tool, and the instructor made learning Logo very accessible, even for a beginner."
"The NetLogo Web platform was new to me, but the course guided me well through its functionalities."
"The NetLogo Web interface was intuitive once I got the hang of it, thanks to the clear instructions."
The project-based approach is highly effective and engaging.
"The project was hands-on and really helped solidify my understanding of agent-based modeling concepts."
"The exercises were practical, and I enjoyed seeing the simulations evolve in real-time."
"I liked the hands-on coding and found the project-based approach perfect for learning."
Explores a fascinating blend of biology and computational modeling.
"I absolutely loved this course! The way it combined biology with computational modeling was brilliant."
"The idea of modeling mycelium is fascinating, and I found the visual simulation really engaging."
"A truly unique course! It was amazing to visualize mycelium growth through an agent-based model."
Some learners encountered challenges with setup or performance.
"I found the NetLogo Web environment a bit clunky, especially when trying to run it on my older browser."
"I struggled with this course. NetLogo Web was difficult to get running correctly, and instructions for troubleshooting were minimal."
"The initial setup had some hurdles; it felt a bit outdated and required some personal problem-solving."
Activities
Be better prepared
before
your course. Deepen your understanding
during
and
after
it. Supplement your coursework and achieve mastery of the topics covered
in Mycelium Growth with NetLogo Web with these
activities:
Create a Collection of Mycology Resources
Show steps
By gathering a collection of resources, you will have a valuable repository of information for further exploration and reference.
Browse courses on
Mycology
Show steps
-
Search for articles, videos, and websites about mycology.
-
Organize the resources into categories.
-
Create a bibliography or reference list.
Review Mycology
Show steps
Reviewing the basics of mycology will provide a strong foundation for understanding the role of mycelium in the ecosystem.
Browse courses on
Mycology
Show steps
-
Read articles and watch videos about mycology.
-
Take a short online course on mycology.
-
Join a mycology club or attend a workshop.
Review Mycelium Running by Paul Stamets
Show steps
This book provides a comprehensive overview of the role of mycelium in the ecosystem and its potential applications, which will enhance your understanding of the topic covered in the course.
View
Mycelium Running
on Amazon
Show steps
-
Read the book.
-
Create a summary of the main points.
-
Write a review of the book.
Four other activities
Expand to see all activities and additional details
Show all seven activities
Practice creating Logo Programs
Show steps
Practice writing simple Logo programs to get started with the basics of the programming language and build your foundation.
Browse courses on
Program Flow
Show steps
-
Start with the official Logo documentation.
-
Review examples of simple Logo programs.
-
Create a Logo program that draws a simple shape.
-
Create variables and use them in your Logo programs.
-
Use control flow to alter the flow of your Logo programs.
Follow NetLogo Web Tutorials
Show steps
Following these tutorials will get you comfortable with the NetLogo Web environment and its features, and help you get started with agent-based modeling in NetLogo.
Show steps
-
Go through the NetLogo Web tutorial.
-
Create a simple agent-based model in NetLogo Web.
-
Use the NetLogo Web documentation to learn more about specific features.
-
Experiment with different NetLogo Web models and simulations.
-
Share your NetLogo Web models with others.
Create a NetLogo Web Model of Mycelium Growth
Show steps
This project will allow you to apply the concepts learned in the course to create a working model of mycelium growth, helping you solidify your understanding and gain practical experience in agent-based modeling.
Show steps
-
Design the model.
-
Collect data on mycelium growth.
-
Implement the model in NetLogo Web.
-
Test and validate the model.
-
Present the model.
Create a Presentation on Mycelium Growth
Show steps
Creating a presentation will help you consolidate your knowledge and prepare you to effectively communicate the importance of mycelium growth to others.
Show steps
-
Gather information on mycelium growth.
-
Organize your information into a logical flow.
-
Create visual aids to support your presentation.
-
Practice your presentation.
-
Deliver your presentation to an audience.
Create a Collection of Mycology Resources
Show steps
By gathering a collection of resources, you will have a valuable repository of information for further exploration and reference.
Browse courses on
Mycology
Show steps
Show steps
Show steps
- Search for articles, videos, and websites about mycology.
- Organize the resources into categories.
- Create a bibliography or reference list.
Review Mycology
Show steps
Reviewing the basics of mycology will provide a strong foundation for understanding the role of mycelium in the ecosystem.
Browse courses on
Mycology
Show steps
Show steps
Show steps
- Read articles and watch videos about mycology.
- Take a short online course on mycology.
- Join a mycology club or attend a workshop.
Review Mycelium Running by Paul Stamets
Show steps
This book provides a comprehensive overview of the role of mycelium in the ecosystem and its potential applications, which will enhance your understanding of the topic covered in the course.
View
Mycelium Running
on Amazon
Show steps
Show steps
Show steps
- Read the book.
- Create a summary of the main points.
- Write a review of the book.
Four other activities
Expand to see all activities and additional details
Show all seven activities
Practice creating Logo Programs
Show steps
Practice writing simple Logo programs to get started with the basics of the programming language and build your foundation.
Browse courses on
Program Flow
Show steps
Show steps
Show steps
- Start with the official Logo documentation.
- Review examples of simple Logo programs.
- Create a Logo program that draws a simple shape.
- Create variables and use them in your Logo programs.
- Use control flow to alter the flow of your Logo programs.
Follow NetLogo Web Tutorials
Show steps
Following these tutorials will get you comfortable with the NetLogo Web environment and its features, and help you get started with agent-based modeling in NetLogo.
Show steps
Show steps
Show steps
- Go through the NetLogo Web tutorial.
- Create a simple agent-based model in NetLogo Web.
- Use the NetLogo Web documentation to learn more about specific features.
- Experiment with different NetLogo Web models and simulations.
- Share your NetLogo Web models with others.
Create a NetLogo Web Model of Mycelium Growth
Show steps
This project will allow you to apply the concepts learned in the course to create a working model of mycelium growth, helping you solidify your understanding and gain practical experience in agent-based modeling.
Show steps
Show steps
Show steps
- Design the model.
- Collect data on mycelium growth.
- Implement the model in NetLogo Web.
- Test and validate the model.
- Present the model.
Create a Presentation on Mycelium Growth
Show steps
Creating a presentation will help you consolidate your knowledge and prepare you to effectively communicate the importance of mycelium growth to others.
Show steps
Show steps
Show steps
- Gather information on mycelium growth.
- Organize your information into a logical flow.
- Create visual aids to support your presentation.
- Practice your presentation.
- Deliver your presentation to an audience.
Career center
Learners who complete Mycelium Growth with NetLogo Web will develop knowledge and skills
that may be useful to these careers:
Mycologist
Mycologist
Mycologists study the biology, ecology, and cultivation of fungi, which are essential decomposers in ecosystems and have a wide range of applications in biotechnology, agriculture, and food production. This course provides a foundation in the growth patterns and behavior of fungi, which can be applied to research and practical applications in mycology. The course's focus on using NetLogo Web, a powerful modeling environment, can also help mycologists develop skills in data analysis and simulation.
Biomimicry Scientist
Biomimicry Scientist
Biomimicry Scientists apply the principles of nature to solve human problems. This course introduces the growth patterns of fungi, which can inspire new designs and technologies in various fields. The course's focus on using NetLogo Web provides hands-on experience in modeling and simulating biological systems, which can be valuable for biomimicry scientists.
Environmental Scientist
Environmental Scientist
Environmental Scientists study the interactions between organisms and their environment. Fungi play a crucial role in nutrient cycling and decomposition processes. This course provides insights into the growth and behavior of fungi, which can be applied to understanding and addressing environmental issues related to soil health, pollution remediation, and climate change.
Computational Biologist
Computational Biologist
Computational Biologists use computational methods to study biological systems. This course introduces NetLogo Web, a powerful modeling environment, and provides experience in simulating the growth of fungi. These skills can be applied to developing models of other biological systems, helping computational biologists gain a deeper understanding of complex biological processes.
Data Scientist
Data Scientist
Data Scientists use data analysis and modeling to extract insights from data. This course provides experience in using NetLogo Web, a modeling environment, to simulate the growth of fungi. This experience can provide data scientists with a strong foundation in modeling and simulation techniques, which can be applied to a wide range of data science applications.
Software Engineer
Software Engineer
Software Engineers design, develop, and maintain software applications. This course introduces NetLogo Web, a modeling environment, and provides experience in simulating the growth of fungi. These skills can be applied to software development projects that involve modeling and simulation, such as game development, robotics, and artificial intelligence.
Bioinformatician
Bioinformatician
Bioinformaticians use computational methods to analyze and interpret biological data. This course provides experience in using NetLogo Web, a modeling environment, to simulate the growth of fungi. These skills can be applied to bioinformatics projects that involve modeling and simulation of biological systems, such as gene expression analysis and protein folding.
Educator
Educator
Educators teach and inspire students in various subjects. This course provides a foundation in the growth patterns and behavior of fungi, which can be incorporated into science curricula. The course's focus on using NetLogo Web, a modeling environment, can also help educators develop skills in teaching computational thinking and modeling.
Technical Writer
Technical Writer
Technical Writers create documentation and instructions for technical products and systems. This course provides a foundation in the growth patterns and behavior of fungi, which can be useful for writing documentation on biotechnology products or applications that involve fungi.
Science Writer
Science Writer
Science Writers communicate complex scientific concepts to the public. This course provides a foundation in the growth patterns and behavior of fungi, which can be useful for writing articles or books on mycology or related scientific topics.
Project Manager
Project Manager
Project Managers plan, execute, and oversee projects. This course provides experience in using NetLogo Web, a modeling environment, to simulate the growth of fungi. These skills can be applied to project management tasks that involve modeling and simulation, such as resource allocation and scheduling.
Business Analyst
Business Analyst
Business Analysts analyze business processes and systems to identify and solve problems. This course provides a foundation in the growth patterns and behavior of fungi, which can be useful for analyzing business processes that involve biotechnology or environmental issues related to fungi.
Quality Assurance Analyst
Quality Assurance Analyst
Quality Assurance Analysts test and evaluate software and systems to ensure they meet quality standards. This course provides experience in using NetLogo Web, a modeling environment, to simulate the growth of fungi. These skills can be applied to testing and evaluating software or systems that involve modeling and simulation.
Customer Service Representative
Customer Service Representative
Customer Service Representatives provide support and assistance to customers. This course provides a foundation in the growth patterns and behavior of fungi, which can be useful for answering customer questions about biotechnology products or applications that involve fungi.
Sales Representative
Sales Representative
Sales Representatives sell products and services to customers. This course provides a foundation in the growth patterns and behavior of fungi, which can be useful for selling biotechnology products or services that involve fungi.
For more career information including salaries, visit:
OpenCourser.com/course/2gj4ab/mycelium
Reading list
We've selected eight books
that we think will supplement your
learning. Use these to
develop background knowledge, enrich your coursework, and gain a
deeper understanding of the topics covered in
Mycelium Growth with NetLogo Web.
Save
Comprehensive guide to the world of mushrooms, including their biology, ecology, and potential uses. It valuable resource for anyone interested in learning more about mycelium and its applications.
Explores the fascinating world of fungi, revealing their hidden lives and their profound impact on our planet. It beautifully written and thought-provoking book that will change the way you think about these amazing organisms.
This textbook provides a comprehensive overview of fungal biology, covering topics such as fungal evolution, ecology, and genetics. It is an essential resource for students and researchers interested in this field.
Save
Provides a comprehensive overview of the natural history of mushrooms. It covers topics such as the evolution of mushrooms, their ecology, and their role in the ecosystem.
Provides detailed instructions on how to grow mushrooms at home. It covers topics such as choosing the right mushroom species, preparing the substrate, and harvesting the mushrooms.
Collection of essays that explore the fascinating world of fungi. It covers topics such as the history of mushroom use, the role of fungi in the ecosystem, and the potential of fungi to solve some of the world's most pressing problems.
Provides a comprehensive overview of the process of cultivating mushrooms. It covers topics such as choosing the right mushroom species, preparing the substrate, and harvesting the mushrooms.
This field guide provides detailed descriptions and photographs of over 1,000 species of mushrooms found in Northeastern North America. It valuable resource for mushroom hunters and anyone interested in learning more about the fungi of this region.
For more information about how these books relate to this course, visit:
OpenCourser.com/course/2gj4ab/mycelium
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