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Command Line Tools for Genomic Data Science

Liliana Florea, PhD

Introduces to the commands that you need to manage and analyze directories, files, and large sets of genomic data. This is the fourth course in the Genomic Big Data Science Specialization from Johns Hopkins University.

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What's inside

Syllabus

Basic Unix Commands

In this module, you will be introduced to Command Line Tools for Genomic Data Science

Week Two

In this module, we'll be taking a look at Sequences and Genomic Features in a sequence of 10 presentations.

Week Three

In this module, we'll be going over Alignment and Sequence Variation in another sequence of 8 presentations.

Week Four

In this module, we'll be going over Tools for Transcriptomics in a sequence of 6 presentations.

Good to know

Know what's good

, what to watch for

, and possible dealbreakers

Introduces learners to basic Unix commands for analyzing genetic data

Builds a foundation in working with genomic data

Teaches fundamental concepts and tools for managing and analyzing large sets of genomic data

Suitable for learners who wish to specialize or deepen their knowledge in Genomic Big Data Science

Delivered by an instructor experienced in Genomic Big Data Science

This is the fourth course in the Genomic Big Data Science Specialization from Johns Hopkins University

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Reviews summary

Genomic data science tools

Learners say that command line tools and genomic data science are covered as expected in this course. However, some learners express concerns about poor instructions and lack of support. Reviews are largely negative.

Course content is as expected.

"This course was well structured, I have benefited a lot from it. Not intimidated by writing my own commands in Ubuntu any more."

Learners had issues with VMBox software.

"Aside from very poor instructions on this, part of this requires you to use a bit torrent downloader, and you are left to your own devices to figure out what bit torrent software might be safe to use."

"modified my registry! I will not have to uninstall everything and return my Windows to a previous start point to undo the issues it is causing."

Course instructions were sometimes unclear.

"Assessments often have inadequate instructions."

"No question the worst class I've taken so far on coursera. I've had to google many times due to the bad explanations instructor gave."

There is little to no support from staff.

"Course instruction was uninteresting, tedious, and, like I mentioned, uninvolved."

"you are pretty much left to your own resources, and your fellow students, for everything because there was never any active support from staff."

Career center

Learners who complete Command Line Tools for Genomic Data Science will develop knowledge and skills that may be useful to these careers:

Bioinformatician

A Bioinformatician takes biological data, such as DNA sequences, and uses computer software to analyze and interpret it. This data can then be used to find new treatments for diseases. The Command Line Tools for Genomic Data Science course will help you develop the skills necessary to succeed in this role by teaching you how to manage and analyze large sets of genomic data.

See salaries and explore the career path for Bioinformatician

Computational Biologist

A Computational Biologist uses mathematical and computational methods to analyze and interpret biological data. This data can be used to find new treatments for diseases, develop new drugs, and improve our understanding of how living organisms work. The Command Line Tools for Genomic Data Science course will help you develop the skills necessary to succeed in this role by teaching you how to manage and analyze large sets of genomic data.

See salaries and explore the career path for Computational Biologist

Database Administrator

A Database Administrator designs, implements, and maintains databases. Databases are used to store and organize data, and they are used by businesses of all sizes to manage their operations. The Command Line Tools for Genomic Data Science course will help you develop the skills necessary to succeed in this role by teaching you how to manage and analyze large sets of data.

See salaries and explore the career path for Database Administrator

Health Information Manager

A Health Information Manager plans, implements, and manages health information systems. These systems are used to store and organize patient data, and they are used by hospitals and other healthcare providers to manage patient care. The Command Line Tools for Genomic Data Science course will help you develop the skills necessary to succeed in this role by teaching you how to manage and analyze large sets of data.

See salaries and explore the career path for Health Information Manager

Statistician

A Statistician collects, analyzes, and interprets data. This data can be used to make informed decisions about a variety of topics, including public policy, business strategy, and scientific research. The Command Line Tools for Genomic Data Science course will help you develop the skills necessary to succeed in this role by teaching you how to manage and analyze large sets of data.

See salaries and explore the career path for Statistician

Information Security Analyst

An Information Security Analyst protects computer systems and networks from cyber attacks. These attacks can come from a variety of sources, including hackers, viruses, and malware. The Command Line Tools for Genomic Data Science course will help you develop the skills necessary to succeed in this role by teaching you how to manage and analyze large sets of data.

See salaries and explore the career path for Information Security Analyst

Software Engineer

A Software Engineer designs, develops, and maintains software applications. These applications can be used for a variety of purposes, including business, education, and entertainment. The Command Line Tools for Genomic Data Science course will help you develop the skills necessary to succeed in this role by teaching you how to manage and analyze large sets of data.

See salaries and explore the career path for Software Engineer

Data Analyst

A Data Analyst collects, analyzes, and interprets data to help businesses make better decisions. This data can come from a variety of sources, including customer surveys, sales data, and social media data. The Command Line Tools for Genomic Data Science course will help you develop the skills necessary to succeed in this role by teaching you how to manage and analyze large sets of data.

See salaries and explore the career path for Data Analyst

Systems Analyst

A Systems Analyst designs, implements, and maintains computer systems. These systems can be used for a variety of purposes, including business, education, and government. The Command Line Tools for Genomic Data Science course will help you develop the skills necessary to succeed in this role by teaching you how to manage and analyze large sets of data.

See salaries and explore the career path for Systems Analyst

Database Designer

A Database Designer designs and implements databases. Databases are used to store and organize data, and they are used by businesses of all sizes to manage their operations. The Command Line Tools for Genomic Data Science course may help you develop some of the skills necessary to succeed in this role by teaching you how to manage and analyze data.

See salaries and explore the career path for Database Designer

Web Developer

A Web Developer designs, develops, and maintains websites. Websites can be used for a variety of purposes, including business, education, and entertainment. The Command Line Tools for Genomic Data Science course may help you develop some of the skills necessary to succeed in this role by teaching you how to manage and analyze data.

See salaries and explore the career path for Web Developer

Technical Writer

A Technical Writer creates and maintains technical documentation. This documentation can include user manuals, training materials, and white papers. The Command Line Tools for Genomic Data Science course may help you develop some of the skills necessary to succeed in this role by teaching you how to manage and analyze data.

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Information Technology Manager

An Information Technology Manager plans, implements, and manages information technology systems. These systems can be used for a variety of purposes, including business, education, and government. The Command Line Tools for Genomic Data Science course may help you develop some of the skills necessary to succeed in this role by teaching you how to manage and analyze data.

See salaries and explore the career path for Information Technology Manager

Computer Network Architect

A Computer Network Architect designs, implements, and maintains computer networks. These networks can be used for a variety of purposes, including business, education, and government. The Command Line Tools for Genomic Data Science course may help you develop some of the skills necessary to succeed in this role by teaching you how to manage and analyze data.

See salaries and explore the career path for Computer Network Architect

Project Manager

A Project Manager plans, executes, and closes projects. Projects can be of any size or complexity, and they can be found in any industry. The Command Line Tools for Genomic Data Science course may help you develop some of the skills necessary to succeed in this role by teaching you how to manage and analyze data.

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Reading list

We've selected 19 books that we think will supplement your learning. Use these to develop background knowledge, enrich your coursework, and gain a deeper understanding of the topics covered in Command Line Tools for Genomic Data Science.

Bioinformatics