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Hans Komen, Han Mulder, Piter Bijma, John Bastiaansen, and Mario Calus

Animal breeding, and especially breeding of farm animals and aquaculture species, has developed into a professional industry with modern technologies, large-scale data collection, and analyses. This has resulted in very efficient and effective breeding programs. However, in many developing countries, and for many lesser known livestock and fish species there is a need for tailor-made breeding programs. In this MOOC, you will learn about the implementation and evaluation of both large industrial scale and the tailor-made breeding programs, in terms of genetic progress and genetic diversity.

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Animal breeding, and especially breeding of farm animals and aquaculture species, has developed into a professional industry with modern technologies, large-scale data collection, and analyses. This has resulted in very efficient and effective breeding programs. However, in many developing countries, and for many lesser known livestock and fish species there is a need for tailor-made breeding programs. In this MOOC, you will learn about the implementation and evaluation of both large industrial scale and the tailor-made breeding programs, in terms of genetic progress and genetic diversity.

Together with other learners, you will dive into the reasons behind crossbreeding in relation to dissemination of genetic improvement. It is essential to know how key biological factors affect the structure of a breeding program and to understand the different structures a breeding program can have.

Join this course and learn everything about how to properly evaluate breeding programs. In several knowledge clips and assignments, you will learn how to assess the effects of legislation, competition, GxE, new technology on breeding programs.

Eliminating diseasesTwo special sections are devoted to genetic diversity and, more specifically, to (i) monogenic recessive disorders, and (ii) genetic diversity at the population level. Monogenic recessive disorders play an important role in breeding programs for companion animals such as dogs and horses. Modern DNA sequencing technology now makes it possible not only to detect these mutations but also to design breeding strategies aimed at eliminating these diseases. Genetic diversity at population level is important to maintain flexibility in populations and to keep animal populations healthy. In this course, you will learn more about how to monitor and conserve genetic diversity in breeding programmes.

After finishing this course you can make informed decisions when setting up a breeding program for a specific animal in a specific production system and recognize and identify key elements of the course in real-life examples of breeding programs.

PrerequisitesPlease know that knowledge of statistics at a 2nd or 3rd year university level is needed to follow this course successfully. This course partially builds on knowledge gained in the MOOC Genetic Models for Animal Breeding.

For WhomAlthough this course is open to everyone, it is particular useful for breeders of:

  • Cows
  • Poultry/Chicken
  • Horses
  • Pigs/Swine
  • Dogs
  • Sheep
  • Goat
  • Fish
  • Shrimp

Professional Certificate Program

This course is part of the Professional Certificate Programme "Animal Breeding and Genetics". Join the other course in the programme, Genetic Models for Animal Breeding, and advance your career as a breeder.

The course is developed with financial support and input from the Koepon Foundation.

What's inside

Learning objectives

  • Introduction to evaluating breeding programmes
  • Crossbreeding and dissemination of genetic improvement
  • Evaluation of breeding programmes
  • Genetic diversity in monogenic recessive diseases
  • Genetic diversity at a population level
  • Breeding programmes in practice

Syllabus

Module 1: Introduction
Introduction to evaluating animal breeding programmes, along the seven steps that are needed to set up a breeding programme.
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Module 2: Crossbreeding and Dissemination
Learning about heterosis and crossbreeding, including crossbreeding schemes in practice. Learning about the most important breeding programme structures and schemes, and about which key factors influence this structure.
Module 3: Evaluation of Breeding Programmes
How do we assess genetic improvement in breeding programmes? Let’s investigate limits to selection, genotype by environment interaction and its consequences for breeding programmes. Learn how multi-trait selection can reduce unwanted correlated responses.
Module 4: Genetic Diversity I - Monogenic Recessive Disorders
This module is all about the nature of monogenic recessive disorders, their mode of inheritance and about strategies to eliminate these defects. Learn about the Hardy-Weinberg equilibrium and about genetic drift in relation to genetic diversity.
Module 5: Genetic Diversity II - Population Level
Let’s study the forces that affect genetic diversity on a population level, and factors that influence the rate of inbreeding. We will predict the rate of inbreeding in simple situations, and learn how to monitor genetic diversity. Finally, we will discuss in vivo and in vitro strategies to conserve genetic diversity.
Module 6: Breeding Programmes in Practice
Introduction to evaluating animal breeding programmes in practice, through a number of real life situations. How do the different topics covered in the course affect choices made when designing and evaluating a breeding programme?

Good to know

Know what's good
, what to watch for
, and possible dealbreakers
Designed for individuals involved in breeding farm animals and aquaculture species
Provides a solid foundation for evaluating breeding programs, which is essential for genetic progress
Covers genetic diversity, a critical aspect of maintaining healthy animal populations
Involves real-life examples of breeding programs, enhancing practical understanding
Requires a strong foundation in statistics and prior knowledge of genetic models for animal breeding

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Activities

Be better prepared before your course. Deepen your understanding during and after it. Supplement your coursework and achieve mastery of the topics covered in Evaluating Animal Breeding Programmes with these activities:
Concepts in genetics
Reacquaint yourself with the core concepts of genetics to strengthen your foundation for this course.
Browse courses on Genetics
Show steps
  • Review notes from previous genetics courses (if any) or textbooks.
  • Go through online resources and videos to brush up on basic concepts.
  • Solve practice problems on Punnett squares, inheritance patterns, and genetic disorders.
Discuss course topics with classmates
Engaging in discussions with classmates will provide you with different perspectives and insights on the course material.
Browse courses on Genetic Diversity
Show steps
  • Find a study group or connect with classmates online.
  • Schedule regular discussion sessions.
  • Prepare for the discussions by reviewing the course material and identifying questions.
  • Participate actively in the discussions and share your thoughts and understanding.
Solve genetics practice problems
Solving practice problems on animal breeding programs and genetic diversity will improve your understanding of the concepts and techniques discussed in the course.
Browse courses on Genetic Diversity
Show steps
  • Identify the key concepts and techniques related to animal breeding programs and genetic diversity.
  • Find practice problems that cover these concepts and techniques.
  • Solve the practice problems using the knowledge gained from the course.
  • Review your solutions and identify areas for improvement.
Six other activities
Expand to see all activities and additional details
Show all nine activities
DNA sequencing techniques
Explore different DNA sequencing techniques to gain a deeper understanding of how genetic information is analyzed.
Browse courses on DNA Sequencing
Show steps
  • Find online tutorials or courses on DNA sequencing.
  • Follow the tutorials to learn about the principles and applications of different techniques.
  • Practice analyzing DNA sequences using online tools or software.
Explore online tutorials on animal breeding
Exploring online tutorials on animal breeding will provide you with additional resources and perspectives on the topics covered in the course.
Browse courses on Genetic Diversity
Show steps
  • Search for online tutorials on animal breeding and genetic diversity.
  • Review the tutorials and select the ones that are relevant to the course material.
  • Complete the tutorials and take notes on the key concepts and techniques.
Crossbreeding and heterosis
Engage in practice exercises to reinforce your understanding of crossbreeding and its impact on genetic improvement.
Show steps
  • Solve problems on calculating heterosis and predicting the performance of crossbred offspring.
  • Analyze case studies on successful crossbreeding programs in different livestock species.
  • Participate in online forums or discussions to exchange ideas and learn from others.
Write a summary of a research paper on animal breeding
Writing a summary of a research paper on animal breeding will help you develop a deeper understanding of the current research and advancements in the field.
Browse courses on Genetic Diversity
Show steps
  • Find a research paper on a topic related to animal breeding programs or genetic diversity.
  • Read the paper and identify the key findings and conclusions.
  • Summarize the paper in your own words, highlighting the most important points.
Animal Breeding Plans
Review a comprehensive book on animal breeding plans to gain insights into the principles and strategies used in real-world breeding programs.
Show steps
  • Read selected chapters that cover topics relevant to the course.
  • Summarize the key concepts and methodologies presented in the book.
  • Apply the knowledge gained to evaluate and design breeding plans for different scenarios.
Contribute to animal breeding software
Actively participate in open-source projects related to animal breeding to enhance your technical skills and contribute to the community.
Browse courses on Open-Source Software
Show steps
  • Identify open-source software projects related to animal breeding, such as genetic data analysis tools or breeding simulation software.
  • Contribute to the project by reporting bugs, suggesting improvements, or developing new features.
  • Engage with the project community through online forums or conferences.

Career center

Learners who complete Evaluating Animal Breeding Programmes will develop knowledge and skills that may be useful to these careers:
Geneticist
A Geneticist requires the vast and interdisciplinary knowledge that this course offers. As a Geneticist, you will be tasked with a role in areas such as manipulating genes to produce better food and studying genetic inheritance. This course will provide you with a foundation in evaluating breeding programmes, understanding crossbreeding, and learning about genetic diversity. These knowledge bases are essential to the career of a Geneticist.
Animal Breeder
One who is determined to enter the occupation of Animal Breeder needs to progress through a curriculum of genetics and biology. Beyond these, the course, Evaluating Animal Breeding Programmes, is an excellent choice to build a foundation. Its topics include the reduction of unwanted correlated responses and the prediction of inbreeding rates, all of which are knowledge bases that are directly applicable to the field.
Dog Breeder
One who seeks to breed dogs should have a grasp of animal breeding programme evaluation. In this position, you will be tasked with creating breeding programmes of your own, so you must know how to plan for the dissemination of genetic improvement. As someone interested in this course, you are headed on the right track.
Fish Breeder
One who wishes to enter the occupation of Fish Breeder can benefit from taking this course. It will introduce you to the evaluation of breeding programmes. You will also learn about crossbreeding and the dissemination of genetic improvement, which are essential to the success of large breeding programmes that are used in this industry.
Farm Manager
Farm Managers will find that their work is enhanced with a deep knowledge of breeding programme evaluation. After all, your main responsibility is to oversee the running of a farm. A key component of this role is the breeding of farm animals. Study this course to learn about crossbreeding, and how to make use of genetic diversity in monogenic recessive diseases, all of which will help you succeed as a Farm Manager.
Ecological Geneticist
This course will be an excellent fit for you if you want to become an Ecological Geneticist. Genetic diversity is a major focus of this role, and much of this course is dedicated to this topic. You will learn about the forces that affect genetic diversity on a population level, and factors that influence the rate of inbreeding.
Genetics Counselor
Genetics Counselors who wish to advance their careers will find this course to be of benefit. It will teach you about genetic diversity in monogenic recessive diseases. As a Genetics Counselor, you routinely work with individuals to help them understand the risk of developing a genetic disease, so it is important to have expertise in this area.
Horse Breeder
As a Horse Breeder, you will be in charge of overseeing the breeding of horses. This comes with responsibilities such as selecting breeding stock, and managing the breeding process. To do this job well, you must learn how to evaluate breeding programmes to ensure that you are making the best decisions for your horses. This course is a good choice because it offers just that.
Animal Scientist
Animal Scientists rely on their interdisciplinary knowledge of animal care and biology to improve the lives of animals and humans alike. If you seek to advance in the field and shape the future of animal-related studies, you should consider this course. It can teach you the principles of crossbreeding and the dissemination of genetic improvement, which are foundational aspects of being a successful Animal Scientist.
Livestock Specialist
If you wish to become a Livestock Specialist, you should take this course. Your role is to improve the quality of livestock by advising farmers on breeding and feeding practices. Much of this course is dedicated to the evaluation of breeding programmes, which will help you perform the essential functions of the role.
Poultry Breeder
Poultry Breeders will find that this course aligns with their career aspirations. You will benefit greatly from learning about breeding programme evaluation as a Poultry Breeder as you are responsible for the development of new poultry varieties. This course can teach you about crossbreeding and the dissemination of genetic improvement, which are essential in the role of a Poultry Breeder.
Shrimp Breeder
Shrimp Breeders can benefit from lessons in crossbreeding and the dissemination of genetic improvement. These are essential topics that will help you succeed in your career. This course may also be useful for learning more about genetic diversity in monogenic recessive diseases.
Conservation Biologist
Conservation Biology is a field where one cannot succeed without a background in conservation genetics. If that is the area you wish to enter, taking this course will prove useful. It will teach you about genetic diversity at the population level and in monogenic recessive diseases, as well as show you how to monitor and conserve genetic diversity in the real world.
Research Scientist
Research Scientists who want to advance in their field may want to consider taking advantage of this course. Your primary responsibility as a Research Scientist is to create and complete scientific research projects, one of the main goals of which is to disseminate genetic improvement. This course will be helpful to you because it covers topics such as evaluating breeding programmes and crossbreeding.
Veterinarian
Although this course is not explicitly relevant to the career of a Veterinarian, it does cover a number of topics that are essential in the field. For example, it teaches about genetic diversity in monogenic recessive diseases, and in vivo and in vitro strategies for conserving genetic diversity. This course may be useful for you if you seek to specialize in animal breeding.

Reading list

We've selected 22 books that we think will supplement your learning. Use these to develop background knowledge, enrich your coursework, and gain a deeper understanding of the topics covered in Evaluating Animal Breeding Programmes.
Contains population genetics, quantitative genetics, mutation, genetic mapping, and all other knowledge necessary for the practice of plant breeding.
Provides a broad overview of livestock production and management. Includes information on animal breeding and genetics.
A classic textbook on animal breeding. Provides a comprehensive overview of the field, from basic principles to advanced topics.
Provides a comprehensive overview of the field of animal breeding and genetics, covering topics such as population genetics, quantitative genetics, and breeding methods. It valuable resource for students and professionals in the field.
Provides a comprehensive overview of the field of mathematical genetics, covering topics such as population genetics, quantitative genetics, and mathematical methods. It valuable resource for students and professionals in the field.
Provides a comprehensive overview of the field of population genetics, covering topics such as population genetics, quantitative genetics, and evolution. It valuable resource for students and professionals in the field.
Provides a comprehensive overview of the field of molecular population genetics, covering topics such as population genetics, quantitative genetics, and molecular methods. It valuable resource for students and professionals in the field.
Provides a comprehensive overview of the field of evolution and the genetics of populations, covering topics such as population genetics, quantitative genetics, and evolution. It valuable resource for students and professionals in the field.
Provides a comprehensive overview of statistical methods for genetic data analysis. Includes chapters on population genetics, quantitative genetics, and molecular genetics.
Provides a comprehensive overview of the field of plant breeding and genetics, covering topics such as population genetics, quantitative genetics, and breeding methods. It valuable resource for students and professionals in the field.
Provides a comprehensive overview of the field of quantitative genetics, with a focus on applications in the wild. It valuable resource for students and professionals in the field.
Provides a comprehensive overview of the field of evolutionary quantitative genetics, covering topics such as population genetics, quantitative genetics, and evolution. It valuable resource for students and professionals in the field.
Provides a comprehensive overview of the genetics of domestic livestock. Includes chapters on the genetics of cattle, pigs, sheep, goats, horses, and poultry.
Provides a comprehensive overview of molecular and statistical methods in genetic epidemiology. Includes chapters on the genetics of complex diseases, methods for identifying genetic variants associated with disease, and applications of genetic epidemiology in public health.
A classic textbook on quantitative genetics. Provides a comprehensive overview of the field, from basic principles to advanced topics.
Provides a comprehensive overview of the molecular genetics of animals. Includes chapters on the structure and function of genes, gene expression, and genome evolution.
Provides a basic overview of animal genetics. Includes chapters on the basics of genetics, the genetics of domestic animals, and the applications of genetics in animal breeding.
A textbook on genetics that is written in a clear and concise style. Includes chapters on the basics of genetics, the genetics of model organisms, and the genetics of human diseases.
A textbook on genetics that is written in a clear and concise style. Includes chapters on the basics of genetics, the genetics of model organisms, and the genetics of human diseases.

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