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Seyun Kim

Our life is fine-controlled by various molecules in cells. Different types of molecules include macromolecules (e.g., protein, nucleic acid) and small molecules. In addition to classical views of central dogma, emerging roles of small molecules called metaboites have been recently proposed to significantly impact biological events. Metabolites are contiuously and dynamically produced by different metabolic pathways, thus playing key roles in energy metabolism as well as macromolecular biosynthesis/degradation. Accumulating evidence clearly suggests that certain types of metabolites exert signaling actions through interactions with macromolecules. Compared to other protein-protein and nucleic acid-protein interactions, metabolite-protein interactions appear significant in living cells, therby mediating specific actions in regulating target protein functions and activities.

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Our life is fine-controlled by various molecules in cells. Different types of molecules include macromolecules (e.g., protein, nucleic acid) and small molecules. In addition to classical views of central dogma, emerging roles of small molecules called metaboites have been recently proposed to significantly impact biological events. Metabolites are contiuously and dynamically produced by different metabolic pathways, thus playing key roles in energy metabolism as well as macromolecular biosynthesis/degradation. Accumulating evidence clearly suggests that certain types of metabolites exert signaling actions through interactions with macromolecules. Compared to other protein-protein and nucleic acid-protein interactions, metabolite-protein interactions appear significant in living cells, therby mediating specific actions in regulating target protein functions and activities.

This 6 week-course will give you a solid introduction to the basic fundamentals of metabolite-mediated cell signaling. I will first define the concept of metabolites and introduces major types of molceular interactions. Throughout 6 weeks, we will study biochemical basis of metabolite actions in cell signaling. In particular, we will study interesting examples of how endogenous small molecules intreact with target proteins and control their functions. These major topics will be explained in the context of human health and disease such as cancer and inflammtion. Everyone appreciates that cell signaling is essential for sustaining life. How can you explain the action of noxious gases like nitric oxide in controlling blood pressure? What can be the fundamental mode of energy metabolites in modulating gene expression? Have you ever thought about ways of how our gut microbiota can influence our body? By studying signaling actions of metabolites, we can better understand the complex but wonderful nature of our cellular signaling system, further identifying novel ways to manage major human disease.

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What's inside

Syllabus

Week 1
Week 2
Week 3
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Week 4
Week 5
Week 6
Final exam

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Examines the intricate interplay between metabolites and target proteins, providing insights into their signaling actions in cellular processes
Taught by Seyun Kim, recognized for their expertise in metabolite-mediated cell signaling
Provides a solid introduction to the fundamental concepts of metabolite-mediated cell signaling
Explores the roles of metabolites in energy metabolism, macromolecular biosynthesis/degradation, and disease
Emphasizes the significance of metabolite-protein interactions in regulating target protein functions and activities
Suitable for those seeking an understanding of metabolite-mediated cell signaling in health and disease

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Activities

Be better prepared before your course. Deepen your understanding during and after it. Supplement your coursework and achieve mastery of the topics covered in Signaling actions of small molecules with these activities:
Review biology and chemistry
Become familiar with the basic concepts of biology and chemistry, which are essential for understanding the role of metabolites in cell signaling.
Browse courses on Biology
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  • Review your high school biology and chemistry textbooks or notes.
  • Take online practice quizzes or tests to assess your understanding.
  • Attend a refresher course or workshop on biology and chemistry.
Review Biochemistry
Refresh your understanding of Biochemistry to strengthen your foundational knowledge for this course.
Browse courses on Biochemistry
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  • Read through your Biochemistry textbooks.
  • Revisit your notes from previous Biochemistry courses.
  • Take practice quizzes or questions to test your comprehension.
  • Review online resources like Khan Academy or Crash Course to supplement your knowledge.
Compile a glossary of key terms
Enhance your understanding of the terminology used in metabolite signaling by creating a comprehensive glossary.
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  • Identify the key terms and concepts from the course materials.
  • Define each term clearly and concisely.
  • Organize the terms in alphabetical order or by category.
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Seek Guidance from a Mentor
Connect with experienced professionals or researchers in the field for personalized guidance and support.
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  • Identify potential mentors who align with your interests.
  • Reach out to them via email, introducing yourself and expressing your interest in their expertise.
  • Schedule regular meetings or virtual sessions to discuss your progress and seek advice.
Follow Online Tutorials on Metabolite-Mediated Signaling
Follow online tutorials on metabolite-mediated signaling. This will help you learn the basics of the topic and get started with your studies.
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  • Find online tutorials on metabolite-mediated signaling.
  • Follow the tutorials and complete the exercises.
Participate in a study group or discussion forum
Engage with your peers to discuss the course content, ask questions, and share insights, promoting a deeper understanding of metabolite signaling.
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  • Find a study group or discussion forum related to the course.
  • Attend the meetings or participate in the online discussions.
  • Contribute to the discussions by sharing your thoughts and questions.
Review Biochemistry
Review the basics of biochemistry, including the structure and function of proteins, nucleic acids, and carbohydrates. This will help you understand the role of metabolites in cell signaling.
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  • Read the assigned chapters in the textbook.
  • Take notes on the key concepts.
  • Complete the practice problems at the end of each chapter.
Follow online tutorials on metabolite signaling
Explore interactive tutorials and videos to gain a visual and hands-on understanding of metabolite signaling pathways.
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  • Search for online tutorials or courses on metabolite signaling.
  • Choose tutorials that cover the specific topics you need to understand.
  • Follow the instructions and complete the exercises in the tutorials.
Join a Study Group
Collaborate with peers to reinforce concepts and gain diverse perspectives.
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  • Connect with classmates through online forums or social media.
  • Establish a regular meeting schedule.
  • Take turns presenting and discussing course material.
  • Work together on problem sets or mock exams.
Practice Problem Sets on Metabolite-Mediated Signaling
Practice solving problem sets on metabolite-mediated signaling. This will help you test your understanding of the topic and identify areas where you need more practice.
Show steps
  • Find practice problem sets online or in textbooks.
  • Solve the problems on your own.
  • Check your answers against the provided solutions.
Solve Practice Problems
Engage in regular problem-solving to solidify your grasp of concepts and apply your knowledge.
Show steps
  • Utilize textbooks or online resources for practice problems.
  • Set aside dedicated time for problem-solving sessions.
  • Start with simpler problems and gradually increase difficulty.
  • Review your solutions and identify areas for improvement.
Design a Cell Signaling Pathway
Design a cell signaling pathway that includes a metabolite-mediated step. This will help you understand the different components of a cell signaling pathway and how they interact with each other.
Show steps
  • Choose a specific cell type and signaling pathway to focus on.
  • Research the different components of the signaling pathway, including the receptors, ligands, and intracellular signaling molecules.
  • Identify a metabolite that could be involved in the signaling pathway.
  • Design a model of the signaling pathway that includes the metabolite-mediated step.
  • Test your model by performing experiments or simulations.
Develop a Model Signaling Pathway
Create a visual representation of a metabolite-signaling pathway to enhance your understanding and retention.
Show steps
  • Select a specific metabolite-signaling pathway.
  • Gather information from textbooks, research papers, and online resources.
  • Create a diagram or flowchart that illustrates the components and interactions of the pathway.
  • Include annotations explaining the functions and key steps.
  • Present your model to the class or share it online.
Contribute to an open-source project on metabolite signaling
Gain practical experience and contribute to the scientific community by participating in an open-source project related to metabolite signaling.
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  • Identify an open-source project that aligns with your interests.
  • Contact the project maintainers to express your interest in contributing.
  • Read the project documentation and familiarize yourself with the codebase.
  • Start working on a specific task or feature.
  • Submit your contributions back to the project.
Create a Video Tutorial on Metabolite-Mediated Signaling
Create a video tutorial that explains the basics of metabolite-mediated cell signaling. This will help you solidify your understanding of the topic and share your knowledge with others.
Show steps
  • Write a script for your video tutorial.
  • Record yourself delivering the tutorial.
  • Edit your video tutorial.
  • Upload your video tutorial to YouTube or another video sharing platform.
Attend a Conference on Metabolite-Mediated Signaling
Attend a conference on metabolite-mediated signaling. This will help you learn about the latest research in the field and network with other scientists.
Show steps
  • Find a conference on metabolite-mediated signaling.
  • Register for the conference.
  • Attend the conference sessions.
  • Network with other scientists.
Write a Research Proposal on Metabolite-Mediated Signaling
Write a research proposal on a topic related to metabolite-mediated signaling. This will help you develop your research skills and deepen your understanding of the topic.
Show steps
  • Choose a specific research topic.
  • Write a literature review on the topic.
  • Develop a research hypothesis.
  • Design a research plan.
  • Write a research proposal.
Participate in a Workshop on Metabolite-Mediated Signaling
Participate in a workshop on metabolite-mediated signaling. This will help you learn about the latest techniques and applications in the field.
Show steps
  • Find a workshop on metabolite-mediated signaling.
  • Register for the workshop.
  • Attend the workshop sessions.
  • Participate in the hands-on exercises.
Volunteer at a Research Lab Studying Metabolite-Mediated Signaling
Volunteer at a research lab studying metabolite-mediated signaling. This will give you hands-on experience with the topic and help you learn from experts in the field.
Show steps
  • Find a research lab studying metabolite-mediated signaling.
  • Contact the lab and express your interest in volunteering.
  • Attend the lab's volunteer training program.
  • Perform volunteer tasks under the supervision of a lab member.

Career center

Learners who complete Signaling actions of small molecules will develop knowledge and skills that may be useful to these careers:
Bioinformatician
Bioinformaticians use computer systems and technology to research, interpret, and automate complex biological data. This course can help build a foundation in the biological processes and macromolecular interactions that are crucial for success in this role. By understanding the signaling actions of small molecules, you can apply that knowledge to the development of drugs and bioinformatics treatments.
Molecular Biologist
Molecular biologists study the structure and function of molecules, particularly DNA, RNA, and proteins. This course provides a solid introduction to the basic fundamentals of metabolite-mediated cell signaling, which would be helpful for a molecular biologist to understand the molecular interactions that occur in living systems.
Neuroscientist
Neuroscientists study the structure and function of the nervous system. This course covers the biochemical basis of metabolite actions in cell signaling, which would be helpful for a neuroscientist to understand the molecular interactions that occur in the nervous system.
Toxicologist
Toxicologists study the effects of toxic substances on living organisms. This course covers the biochemical basis of metabolite actions in cell signaling, which would be helpful for a toxicologist to understand the mechanisms of action of toxic substances.
Pharmacologist
Pharmacologists study the effects of drugs on living organisms. This course covers the biochemical basis of metabolite actions in cell signaling, which would be helpful for a pharmacologist to understand the mechanisms of action of drugs.
Biomedical Engineer
Biomedical engineers combine engineering principles with medical and biological science to design and create devices and systems to improve human health. This course covers the biochemical basis of metabolite actions in cell signaling, which can help biomedical engineers develop more effective treatments for diseases.
Physician
Physicians diagnose and treat diseases. This course covers the biochemical basis of metabolite actions in cell signaling, which would be helpful for a physician to understand the molecular mechanisms of disease.
Computational Biologist
Computational biologists use computational techniques to analyze large datasets of biological data. This course covers the basic fundamentals of metabolite-mediated cell signaling, which would be helpful for a computational biologist to understand the molecular interactions that occur in living systems.
Research Scientist
Research scientists conduct scientific research to advance knowledge in various fields. This course provides a solid introduction to the basic fundamentals of metabolite-mediated cell signaling, which would be helpful for a research scientist to understand the molecular interactions that occur in living systems.
Biophysicist
Biophysicists explore the physical principles of living systems and how they function at the molecular level. This course covers the basic fundamentals of metabolite-mediated cell signaling, which would be very helpful for a biophysicist to understand the molecular interactions that occur in living systems.
Data Scientist
Data scientists use scientific methods, processes, algorithms, and systems to extract knowledge and insights from data in various forms, both structured and unstructured. This course provides a solid introduction to the basic fundamentals of metabolite-mediated cell signaling, which would be helpful for a data scientist to understand the molecular interactions that occur in living systems and to develop new methods for analyzing biological data.
Chemical Engineer
Chemical engineers work in industries that produce chemicals, fuels, pharmaceuticals, food, and more. This course covers the biochemical basis of metabolite actions in cell signaling, which would be helpful for a chemical engineer to understand the processes that occur in living systems.
Physicist
Physicists study the laws of nature and the physical properties of matter and energy. This course covers the biochemical basis of metabolite actions in cell signaling, which would be helpful for a physicist to understand the molecular interactions that occur in living systems.
Science Writer
Science writers communicate complex scientific concepts to the public. This course covers the biochemical basis of metabolite actions in cell signaling, which would be helpful for a science writer to understand the molecular interactions that occur in living systems.
Nanotechnologist
Nanotechnologists work in industries that produce nanomaterials, devices, and systems. This course covers the biochemical basis of metabolite actions in cell signaling, which would be helpful for a nanotechnologist to understand the processes that occur in living systems.

Reading list

We've selected six books that we think will supplement your learning. Use these to develop background knowledge, enrich your coursework, and gain a deeper understanding of the topics covered in Signaling actions of small molecules.
Widely used as a college-level textbook, this book provides a comprehensive introduction to cell biology, including detailed chapters on metabolism, signal transduction, and gene expression.
Covers the fundamentals of biochemistry, including chapters on metabolism, signal transduction, and gene expression.
Provides a comprehensive overview of protein structure, with chapters on protein folding, protein interactions, and protein function.
Provides a comprehensive overview of immunology, with chapters on the immune system and its role in health and disease.

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